Wägele, J. W .(1996) First principles of phylogenetic systematics, a basis for numerical methods used for morphological and molecular characters. Vie Milieu 46: 125-138
Bender, C., Hildenbrandt, H., Schmidt-Loske, K. Grimm, V, Wissel, C., Henle, K. (1996): Consolidation of vineyards, mitigations, and survival of the common wall lizard (Podarcis muralis) in isolated habitat fragments. - In: Settele, J., Margules, C., Poschlod, P., Henle, K. (eds.): Species survival in fragmented landscapes. Kluwer Academic Publishers (Dordrecht). pp. 248-261.
Matheus, J.C., U. Wittmann, O. Jahn, M. Leutfeld, and K.-L. Schuchmann (1996): Reactions of birds to nestling predation by a snake. Ornitologia Neotropical 7: 163-164. Online at: http://132.248.13.1/pdf/links/neo/rev7/vol7_2/orni_7_2_163-164.pdf
Wägele J. W. (1995) Die Antarktis - erdgeschichtliche Brutstätte für exotische Krebse. In: I. Hempel, G. Hempel (ed.), Biologie der Polarmeere, G. Fischer Verlag: 267-274
Wägele, J. W. (1995) On the information content of characters in molecular systematics and comparative morphology. J. Zool. Syst. Evol. Research 33: 42-47
Wägele, J. W., Stanjek, G. (1995): Arthropod 18SrDNA sequences revisited: monophyly of the Tracheata depends on the alignment. J. Zool. Syst. Evol. Research. 33: 75-80
Wägele, J. W., Voelz, J. (1995) Older than the Atlantic Ocean: Discovery of a Microcerberus in North America and erection of Coxicerberus n.gen.. J. Crust. Biol. 15: 733-745
Brey T., Klages M., Dahm C., Gorny M., Gutt J., Hain S., Stiller M., Arntz W., Wägele J.W., Zimmermann A. (1994). Antarctic benthic diversity. Nature 368: 297
Wägele J. W. (1994) Review of methodological problems of computer cladistics exemplified with a case study on isopod phylogeny (Crustacea, Isopoda). Z. zool. Syst. Evolut.forsch. 32: 81-107.
Reboreda P., Wägele J. W., Garmendia J. M. (1994): On rare Arcturidae from the Atlantic coast of Spain with description of Arcturella carlosoteroi n.sp.. Zool. Anz. 233: 251-263.
Wägele J. W. (1994). Notes on Antarctic and South American Serolidae (Crustacea, Isopoda) with remarks on the phylogenetic biogeography and a description of new genera. Zool. Jb. Syst. 121: 3-69.
Gassmann, D., Hille, A. & Naumann, C. M. (1994): Morphometrische Variation in der Kontaktzone zweier Semispezies des Zygaena-transalpina - Komplexes (Lepidoptera: Zygaenidae). Verhandlungen der Deutschen Zoologischen Gesellschaft 87(1) (Short Communications): 223.
Wägele J. W. (1993) Rejection of the "Uniramia" hypothesis and implications of the Mandibulata concept. Zool. Jahrb. Abt. Syst. Ökol. Tiere 120: 253-288.
