Computational Genomics

Böhne A, Oğuzhan Z, Chrysostomakis I, Vitt S, Meuthen D, Martin S, Kukowka S and Thünken T. (2023) Evidence for selfing in a vertebrate from whole-genome sequencing. Genome Research: 33: 2133-2142, doi:10.1101/gr.277368.122.

Moris, V.C., Podsiadlowski, L., Martin, S., Oeyen, J.P., Donath, A., Petersen, M., Wilbrandt, J., Misof, B., Liedtke, D., Thamm, M., Scheiner, R., Schmitt, T., Niehuis, O. (2023). Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera. Communications Biology 6: 147

Paraskevopoulou Sofia, Käfer Simon, Zirkel Florian, Donath Alexander, Petersen Malte, Liu Shanlin, Zhou Xin, Drosten Christian, Misof Bernhard, Junglen Sandra, Viromics of extant insect orders unveil the evolution of the flavi-like superfamily, Virus Evolution, 2021;, veab030, https://doi.org/10.1093/ve/veab030

Karmeinski, D., Meusemann, K., Goodheart, J. A., Schroedl, M., ..., Wägele, H., Donath, A. (2021): Transcriptomics provides a robust framework for the relationships of the major clades of cladobranch sea slugs (Mollusca, Gastropoda, Heterobranchia), but fails to resolve the position of the enigmatic genus Embletonia. - BMC Ecolology and Evolution 21: 226. https://doi.org/10.1186/s12862-021-01944-0.

Pauli, T., Meusemann, K., Kukowka, S., Sann, M., Donath, A., Mayer C., Oeyen, J.P., ..., Podsiadlowski, L., ..., Misof, B., Peters, R.S., et al. (2021): Analysis of RNA-Seq, DNA Target Enrichment, and Sanger Nucleotide Sequence Data Resolves Deep Splits in the Phylogeny of Cuckoo Wasps (Hymenoptera: Chrysididae). - Insect Systematics and Diversity 5: 1. https://doi.org/10.1093/isd/ixaa018.

Oeyen, J.P., Baa-Puyoulet, P., Benoit, J.B., Beukeboom, L.W., Bornberg-Bauer, E., Buttstedt, A., Calevro, F., Cash, E.I., Chao, H., Charles, H., Chen, M.-J.M., Childers, C., Cridge, A.G., Dearden, P., Dinh, H., Doddapaneni, H.V., Dolan, A., Donath, A., Dowling, D., Dugan, S., Duncan, E., Elpidina, E.N., Friedrich, M., Geuverink, E., Gibson, J.D., Grath, S., Grimmelikhuijzen, C.J.P., Große-Wilde, E., Gudobba, C., Han, Y., Hansson, B.S., Hauser, F., Hughes, D.S.T., Ioannidis, P., Jacquin-Joly, E., Jennings, E.C., Jones, J.W., Klasberg, S., Lee, S.L., Lesný, P., Lovegrove, M., Martin, S., Martynov, A.G., Mayer, C., Montagné, N., Moris, V.C., Munoz-Torres, M., Murali, S.C., Muzny, D.M., Oppert, B., Parisot, N., Pauli, T., Peters, R.S., Petersen, M., Pick, C., Persyn, E., Podsiadlowski, L., Poelchau, M.F., Provataris, P., Qu, J., Reijnders, M.J.M.F., Marcus von Reumont, B., Rosendale, A.J., Simao, F.A., Skelly, J., Sotiropoulos, A.G., Stahl, A.L., Sumitani, M., Szuter, E.M., Tidswell, O., Tsitlakidis, E., Vedder, L., Waterhouse, R.M., Werren, J.H., Wilbrandt, J., Worley, K.C., Yamamoto, D.S., van de Zande, L., Zdobnov, E.M., Ziesmann, T., Gibbs, R.A., Richards, S., Hatakeyama, M., Misof, B., Niehuis, O., 2020. Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera. Genome Biology and Evolution evaa106.